SNP Profiles matching CC 137

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
1._RUQ_1637	_	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
2._RUQ_1634	_	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
3._RUQ_1637	CG	CT	_	_	TT	_	_	_	_	CT	AG	_	_	_
4._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
5._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
6._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
7._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
8._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
9._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
10._CC_137	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
11._GC-01-134-7-11	CG	CT	TT	AA	TT	CT	CT	AA	AA	CT	AG	CT	AA	GG
12._CC_10	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
13._CC_10	GG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
14._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
15._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
16._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
17._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
18._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
19._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
20._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
21._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
22._CC_10	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG
23._GC-08-271-8-43	CG	CT	TT	AA	GT	CT	CT	AA	AA	CT	AG	CT	AA	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	CC	GG	GG	AG	CT	CC	TT	CT	CC	AG	GG	CT	AA
1._RUQ_1637	TT	CC	GG	GG	AG	CT	CC	TT	CT	CC	AG	GG	CT	AA
2._RUQ_1634	TT	CC	GG	GG	AG	CT	CC	TT	CT	CC	AG	GG	CT	AA
3._RUQ_1637	_	CC	GG	GG	_	CT	CC	TT	-	CC	AG	_	CT	AA
4._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
5._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
6._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
7._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
8._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
9._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
10._CC_137	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
11._GC-01-134-7-11	TT	CC	GG	GG	GG	CT	CC	TT	CT	CC	AG	GG	CT	AA
12._CC_10	TT	CC	GG	GT	AG	CT	CC	TT	CT	CC	AG	GG	CT	AG
13._CC_10	TT	CC	GG	GT	AG	CT	CC	TT	CT	CC	AG	GG	CT	AG
14._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
15._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
16._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
17._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
18._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
19._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
20._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
21._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	CT	AG
22._CC_10	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	_	AG
23._GC-08-271-8-43	TT	CC	GG	GT	GG	CT	CC	TT	CT	CC	AG	GG	_	AG

	29	30	31	32	33
_Input profile	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1637	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1634	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1637	AC	GT	CC	_	_	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CC_137	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._GC-01-134-7-11	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CC_137	AC	GT	CC	_	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-01-134-7-11	AC	GT	CC	_	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._CC_10	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._GC-08-271-8-43	AC	GT	CC	TT	GG	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CC_137

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

1._CC_137 RUQ_1637

identical
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

2._IMC_14 RUQ_1634

identical
32 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._CC_137 RUQ_1637

97.2 %
18 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

4._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 6

Dapeng Zhang, 2016

5._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 5

Dapeng Zhang, 2016

6._CC_137

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._CC_137 GC-01-134-7-11

97 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

10._CC_137

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1711 1

Dapeng Zhang, 2016

11._CC_137 GC-01-134-7-11

96.9 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

12._CC_10

95.5 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

13._CC_10

95.5 %
33 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: Trial 1/Rep 1 45

Dapeng Zhang, 2016

14._CC_10

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 9

Dapeng Zhang, 2016

15._CC_10

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 7

Dapeng Zhang, 2016

16._CC_10

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 5

Dapeng Zhang, 2016

17._CC_10

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

18._CC_10 GC-08-271-8-43

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

19._CC_10 GC-08-271-8-43

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

20._CC_10 GC-08-271-8-43

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: Dead

21._CC_10 GC-08-271-8-43

92.4 %
33 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: Dead

22._CC_10

92.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8843 2

Dapeng Zhang, 2016

23._CC_10 GC-08-271-8-43

92.2 %
32 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1442	3	TcSNP1414	4	TcSNP1350	5	TcSNP1253
6	TcSNP1165	7	TcSNP1144	8	TcSNP1075	9	TcSNP1062	10	TcSNP1060
11	TcSNP998	12	TcSNP994	13	TcSNP953	14	TcSNP929	15	TcSNP917
16	TcSNP891	17	TcSNP872	18	TcSNP723	19	TcSNP645	20	TcSNP619
21	TcSNP577	22	TcSNP560	23	TcSNP534	24	TcSNP529	25	TcSNP469
26	TcSNP429	27	TcSNP242	28	TcSNP230	29	TcSNP193	30	TcSNP150
31	TcSNP144	32	TcSNP32	33	TcSNP25